Impact of rare and low-frequency sequence variants on reliability of genomic prediction in dairy cattle

Table 1 Reliability of genomic prediction using different marker sets

Marker sets	Fertility	Health	Longevity
50 k SNP array	39.2	31.9	28.5
50 k + All genic RLFV	40.3	32.6	27.7
50 k + RLFV in genes with significant association	39.9	31.8	27.8
50 k + RLFV with medium-to-high impact annotations	39.7	32.6	27.1
50 k + RLFV with high impact annotations	38.4	31.5	26.3

Reliabilities are presented on a scale from 0 to 100%. Accuracies, i.e. the square roots of the reliabilities, ranged from 0.513 to 0.635 on a scale from 0 to 1, while the corresponding standard errors ranged from 0.011 to 0.014

ISSN: 1297-9686