| |
Concordance by genotype (%)
|
Isometric log-ratios
|
|---|
|
True = 0
|
True = 1
|
True = 2
|
3 partsa
|
2 partsb
|
|---|
|
0|0
|
1|0
|
2|0
|
0|1
|
1|1
|
2|1
|
0|2
|
1|2
|
2|2
|
0|0 vs. 1|0, 2|0
|
1|1 vs. 0|1, 2|1
|
2|2 vs. 0|2, 1|2
|
0|0 vs. 1|0
|
2|2 vs. 1|2
|
|---|
|
Observed
|
98.45
|
1.42
|
0.13
|
24.15
|
52.62
|
23.23
|
0.18
|
1.71
|
98.10
|
4.44
|
0.65
|
4.22
|
3.00
|
2.86
|
|
Simulated
|
|
0%
|
99.62
|
0.35
|
0.03
|
23.57
|
52.98
|
23.45
|
0.04
|
0.47
|
99.48
|
5.61
|
0.66
|
5.35
|
4.00
|
3.78
|
|
0.1%
|
99.53
|
0.44
|
0.03
|
23.59
|
53.52
|
22.89
|
0.08
|
0.52
|
99.40
|
5.47
|
0.68
|
5.06
|
3.83
|
3.72
|
|
0.5%
|
99.28
|
0.66
|
0.06
|
23.91
|
53.22
|
22.87
|
0.10
|
0.92
|
98.98
|
5.07
|
0.67
|
4.72
|
3.55
|
3.31
|
|
1%
|
98.99
|
0.90
|
0.10
|
23.70
|
53.23
|
23.07
|
0.14
|
1.33
|
98.53
|
4.72
|
0.67
|
4.43
|
3.32
|
3.04
|
|
2%
|
98.20
|
1.64
|
0.16
|
23.73
|
52.90
|
23.37
|
0.23
|
2.16
|
97.62
|
4.29
|
0.66
|
4.04
|
2.89
|
2.70
|
|
5%
|
96.34
|
3.29
|
0.37
|
23.56
|
53.37
|
23.07
|
0.59
|
4.75
|
94.66
|
3.65
|
0.68
|
3.29
|
2.39
|
2.12
|
|
Regression
|
|
R2
|
0.999
|
0.998
|
0.999
|
0.014
|
0.044
|
0.014
|
0.989
|
1.000
|
0.999
|
0.993
|
0.213
|
0.981
|
0.995
|
0.989
|
|
Estimate
|
1.74
|
1.77
|
1.47
|
–
|
–
|
–
|
1.28
|
1.45
|
1.43
|
1.58
|
–
|
1.48
|
1.67
|
1.46
|
- aThe 3-part isometric log-ratios take the form \(\sqrt {\frac{2}{3}} \ln \frac{(0|0)}{{\sqrt {\left( {1|0} \right)\cdot\left( {2|0} \right)} }}\)
- bThe 2-part isometric log-ratios take the form \(\frac{1}{\sqrt 2 }\ln \frac{(0|0)}{{\left( {1|0} \right)}}\)
