Skip to main content

Table 1 Number of SNPs used for GWAS after quality control for different SNP densities and use of imputed whole-genome sequence dosage or genotype scores

From: Imputation to whole-genome sequence using multiple pig populations and its use in genome-wide association studies

  DL-line LW-line
80 K SNP genotypes 38,228 34,588
660 K SNP genotypes 311,888 491,169
iWGS_genotype score 2,495,861 3,476,936
iWGS_dosage score 5,841,784 5,453,881