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Table 1 Number of SNPs used for GWAS after quality control for different SNP densities and use of imputed whole-genome sequence dosage or genotype scores

From: Imputation to whole-genome sequence using multiple pig populations and its use in genome-wide association studies

 

DL-line

LW-line

80 K SNP genotypes

38,228

34,588

660 K SNP genotypes

311,888

491,169

iWGS_genotype score

2,495,861

3,476,936

iWGS_dosage score

5,841,784

5,453,881