A validation study of loci associated with mastitis resistance in two French dairy sheep breeds

Table 5 List of SNPs associated with the different phenotypes for the Manech Tête Rousse population genotyped with the 3SR-mastitis-960-SNP custom chip

OAR	SNP ID	SNP position	MAF %	Estimation of SNP effect	SE	p value of Wald test	Trait
2	rs403180214	206231638	50	− 0.3	0.1	1.7E−04	LSCS
	rs430641657	207218842	12	16.0	4.3	2.9E−04	MILK
	rs425558509	208650955	42	− 1.5	0.5	2.6E−03	FAT
	rs398918249	209409342	43	− 1.0	0.3	1.3E−03	PROTEIN
16	rs404369966	28321220	26	1.0	0.3	3.6E−03	PROTEIN
	rs404369966	28321220	26	− 10.2	3.4	2.7E−03	MILK
	rs428277629	28526130	35	1.0	0.3	2.0E−03	PROTEIN
	rs418639132	28632456	41	1.0	0.3	1.0E−03	PROTEIN
	rs405638287	29030021	37	1.1	0.3	7.4E−04	PROTEIN
	rs399031726	29072599	36	1.2	0.3	2.5E−04	PROTEIN
	rs422927329	29304504	37	1.2	0.3	1.1E−04	PROTEIN
	rs402269497	30319608	19	− 12.5	3.8	1.2E−03	MILK
	rs421638047	30692759	28	1.9	0.6	1.1E−03	FAT
			28	1.2	0.3	6.1E−04	PROTEIN
			28	− 12.9	3.4	2.1E−04	MILK
	rs409981325	31298560	10	0.4	0.1	1.9E−03	LSCS
	rs409954614	34424863	37	1.0	0.3	1.2E−03	PROTEIN

There are no significant SNPs at the Bonferroni threshold for this breed, all the SNPs presented in this table are significant with the suggestive threshold
OAR Ovis aries chromosome number, MAF minor allele frequency, SE standard error of the estimated SNP effect

ISSN: 1297-9686