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Table 2 Average absolute changes in allele frequencies at markers and QTL, and average increase in the frequencies of favourable QTL alleles generated by POCS and GOCS at \(0.01\varvec{ }{\Delta F}_{{\text{true}}}\) in breeding scheme M25L5 with two prediction methods (PBLUP and GBLUP)

From: Pedigree relationships to control inbreeding in optimum-contribution selection realise more genetic gain than genomic relationships

Prediction

OCS

Absolute-marker alleles

Absolute-QTL alleles

Favourable-QTL alleles

PBLUP

POCS

0.0475

0.0472

0.00428

 

GOCS

0.0456

0.0455

0.00356

GBLUP

POCS

0.0493

0.0487

0.00459

 

GOCS

0.0471

0.0468

0.00438

  1. Changes in allele frequencies are means of 200 simulation replicates. SD between the replicates ranged from 0.00132 to 0.00159 (absolute-marker alleles and absolute-QTL alleles) and from 0.00078 to 0.00085 (favourable QTL alleles)