Skip to main content

Table 2 Chromosomes, regions, and additive genetic variance explained by significant (> 1% of genetic variance) sliding 1-Mb SNP windows for resistance to CD in two rainbow trout aquaculture breeding populations from the National Center for Cool and Cold Water Aquaculture (NCCCWA) and Troutlodge, Inc. (TLUM)

From: Whole-genome mapping of quantitative trait loci and accuracy of genomic predictions for resistance to columnaris disease in two rainbow trout breeding populations

  Omy Positions (bp) Var (%) Start SNP End SNP
NCCCWA 8 12,432,114–13,425,593 1.10 Affx-88914007 Affx-88948574
8 71,329,529–72,150,736 1.14 Affx-88923706 Affx-88916609
9 49,518,971–50,513,124 1.17 Affx-88933418 Affx-88932687
9 54,751,745–55,726,546 3.22 Affx-88919315 Affx-88950719
10 29,581,097–30,577,995 1.24 Affx-88920532 Affx-88916735
10 35,177,214–36,166,546 2.36 Affx-88941227 Affx-88904550
14 21,882,519–22,880,243 1.34 Affx-88942677 Affx-88914952
17 30,443,799–31,246,426 1.21 Affx-88915578 Affx-88951951
17 51,692,366–52,657,204 1.38 Affx-88951951 Affx-88917463
17 54,077,677–55,070,553 1.07 Affx-88941723 Affx-88930918
17 57,087,593–58,071,730 1.38 Affx-88928607 Affx-88956489
17 59,030,557–59,975,343 12.45 Affx-88934715 Affx-88947595
17 61,685,815–62,683,690 11.17 Affx-88932531 Affx-88933611
21 11,636,165–12,635,637 1.19 Affx-88924627 Affx-88961166
TLUM 1 2,301,207–3,237,107 1.93 Affx-88920221 Affx-88954173
1 9,431,533–10,407,809 7.17 Affx-88952286 Affx-88911654
2 37,586,371–38,445,257 2.00 Affx-88912711 Affx-88941285
2 66,211,405–67,186,468 3.62 Affx-88959474 Affx-88916549
4 7,413,629–8,260,785 5.02 Affx-88907515 Affx-88957694
6 4,230,508–5,197,305 1.76 Affx-88918979 Affx-88930111
8 27,954,167–28,911,002 1.07 Affx-88910195 Affx-88955224
8 63,842,515–64,766,638 2.73 Affx-88927151 Affx-88958769
8 72,702,968–73,532,230 4.92 Affx-88919407 Affx-88912966
8 73,780,383–74,651,500 2.73 Affx-88940010 Affx-88942756
9 62,803,755–63,600,917 2.63 Affx-88923649 Affx-88923401
11 10,741,327–11,703,113 1.04 Affx-88925342 Affx-88919279
11 19,987,730–20,963,900 3.31 Affx-88942955 Affx-88952300
11 24,003,333–24,980,010 1.08 Affx-88915068 Affx-88937020
12 45,554,341–46,523,458 2.63 Affx-88918831 Affx-88918749
12 49,164,838–50,133,047 1.73 Affx-88916873 Affx-88961655
14 17,503,583–18,499,177 1.04 Affx-88911639 Affx-88934688
14 22,775,910–23,775,341 1.90 Affx-88955373 Affx-88908365
14 79,211,475–79,941,269 1.55 Affx-88904616 Affx-88917061
17 60,281,825–61,260,250 1.01 Affx-88944127 Affx-88956686
17 61,789,296–62,742,113 1.37 Affx-88923456 Affx-88919735
21 14,178,714–15,156,045 1.02 Affx-88954133 Affx-88959956
23 7,188,750–8,154,673 2.77 Affx-88944584 Affx-88906618
23 9,817,471–10,809,676 1.13 Affx-88925895 Affx-88930453
28 30,120,286–31,120,043 3.25 Affx-88955437 Affx-88906826
28 35,759,045–36,743,773 2.43 Affx-88909402 Affx-88914851