Table 2 Chromosomes, regions, and additive genetic variance explained by significant (> 1% of genetic variance) sliding 1-Mb SNP windows for resistance to CD in two rainbow trout aquaculture breeding populations from the National Center for Cool and Cold Water Aquaculture (NCCCWA) and Troutlodge, Inc. (TLUM)
| Â | Omy | Positions (bp) | Var (%) | Start SNP | End SNP |
|---|---|---|---|---|---|
NCCCWA | 8 | 12,432,114–13,425,593 | 1.10 | Affx-88914007 | Affx-88948574 |
8 | 71,329,529–72,150,736 | 1.14 | Affx-88923706 | Affx-88916609 | |
9 | 49,518,971–50,513,124 | 1.17 | Affx-88933418 | Affx-88932687 | |
9 | 54,751,745–55,726,546 | 3.22 | Affx-88919315 | Affx-88950719 | |
10 | 29,581,097–30,577,995 | 1.24 | Affx-88920532 | Affx-88916735 | |
10 | 35,177,214–36,166,546 | 2.36 | Affx-88941227 | Affx-88904550 | |
14 | 21,882,519–22,880,243 | 1.34 | Affx-88942677 | Affx-88914952 | |
17 | 30,443,799–31,246,426 | 1.21 | Affx-88915578 | Affx-88951951 | |
17 | 51,692,366–52,657,204 | 1.38 | Affx-88951951 | Affx-88917463 | |
17 | 54,077,677–55,070,553 | 1.07 | Affx-88941723 | Affx-88930918 | |
17 | 57,087,593–58,071,730 | 1.38 | Affx-88928607 | Affx-88956489 | |
17 | 59,030,557–59,975,343 | 12.45 | Affx-88934715 | Affx-88947595 | |
17 | 61,685,815–62,683,690 | 11.17 | Affx-88932531 | Affx-88933611 | |
21 | 11,636,165–12,635,637 | 1.19 | Affx-88924627 | Affx-88961166 | |
TLUM | 1 | 2,301,207–3,237,107 | 1.93 | Affx-88920221 | Affx-88954173 |
1 | 9,431,533–10,407,809 | 7.17 | Affx-88952286 | Affx-88911654 | |
2 | 37,586,371–38,445,257 | 2.00 | Affx-88912711 | Affx-88941285 | |
2 | 66,211,405–67,186,468 | 3.62 | Affx-88959474 | Affx-88916549 | |
4 | 7,413,629–8,260,785 | 5.02 | Affx-88907515 | Affx-88957694 | |
6 | 4,230,508–5,197,305 | 1.76 | Affx-88918979 | Affx-88930111 | |
8 | 27,954,167–28,911,002 | 1.07 | Affx-88910195 | Affx-88955224 | |
8 | 63,842,515–64,766,638 | 2.73 | Affx-88927151 | Affx-88958769 | |
8 | 72,702,968–73,532,230 | 4.92 | Affx-88919407 | Affx-88912966 | |
8 | 73,780,383–74,651,500 | 2.73 | Affx-88940010 | Affx-88942756 | |
9 | 62,803,755–63,600,917 | 2.63 | Affx-88923649 | Affx-88923401 | |
11 | 10,741,327–11,703,113 | 1.04 | Affx-88925342 | Affx-88919279 | |
11 | 19,987,730–20,963,900 | 3.31 | Affx-88942955 | Affx-88952300 | |
11 | 24,003,333–24,980,010 | 1.08 | Affx-88915068 | Affx-88937020 | |
12 | 45,554,341–46,523,458 | 2.63 | Affx-88918831 | Affx-88918749 | |
12 | 49,164,838–50,133,047 | 1.73 | Affx-88916873 | Affx-88961655 | |
14 | 17,503,583–18,499,177 | 1.04 | Affx-88911639 | Affx-88934688 | |
14 | 22,775,910–23,775,341 | 1.90 | Affx-88955373 | Affx-88908365 | |
14 | 79,211,475–79,941,269 | 1.55 | Affx-88904616 | Affx-88917061 | |
17 | 60,281,825–61,260,250 | 1.01 | Affx-88944127 | Affx-88956686 | |
17 | 61,789,296–62,742,113 | 1.37 | Affx-88923456 | Affx-88919735 | |
21 | 14,178,714–15,156,045 | 1.02 | Affx-88954133 | Affx-88959956 | |
23 | 7,188,750–8,154,673 | 2.77 | Affx-88944584 | Affx-88906618 | |
23 | 9,817,471–10,809,676 | 1.13 | Affx-88925895 | Affx-88930453 | |
28 | 30,120,286–31,120,043 | 3.25 | Affx-88955437 | Affx-88906826 | |
28 | 35,759,045–36,743,773 | 2.43 | Affx-88909402 | Affx-88914851 |