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Table 2 Genome-wide significant SNPs for death and suggestive significant SNPs for carrier-state

From: A genome-wide association study explores the genetic determinism of host resistance to Salmonella pullorum infection in chickens

Trait

SNP

GGA

Position

P-value

Annotation

Gene

Death

rs316916108

4

33,478,824

2.11E−08

Upstream

LRBA

rs315352777

4

33,538,092

5.85E−07

intergenic

 

rs315824851

4

33,548,952

3.72E−08

Intergenic

 

rs314483802

4

33,552,203

4.38E−10

Intergenic

 

rs313220844

4

33,553,077

4.38E−10

Intergenic

 

rs312359707

4

33,554,042

3.72E−08

Intergenic

 

rs313807513

4

33,571,056

6.25E−08

Intergenic

 

rs316981702

4

33,610,050

3.96E−09

Intron

FAM160A1

rs14448652

4

33,616,458

2.73E−08

Intron

FAM160A1

rs315488527

4

33,644,936

4.80E−08

Intron

FAM160A1

rs314369582

4

33,746,779

5.43E−07

Intergenic

 

rs314592872

4

33,768,246

3.61E−07

Intergenic

 

rs317151264

4

33,782,635

4.02E−07

Intergenic

 

rs13514687

4

33,873,598

7.70E−08

Intergenic

 

rs16387631

4

33,960,862

4.64E−07

Intron

FBXW7

rs313841618

4

33,973,296

3.16E−07

Intron

FBXW7

rs15536382

4

34,031,794

3.73E−07

Upstream

FBXW7

rs313296110

4

43,491,648

2.53E−07

Intergenic

 

rs317612144

4

43,491,692

2.39E−07

Intergenic

 

rs318239967

4

43,491,742

3.30E−07

Intergenic

 

rs313303913

4

44,551,373

2.05E−07

Upstream

GPM6A

Carrier-state

rs312524326

5

50,147,152

9.52E−06

Intergenic

 

rs312970356

2

23,295,087

9.65E−06

Intergenic

 

rs317601331

5

49,848,247

1.09E−05

Intergenic

Â