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Table 1 Description of the scenarios used to mimic different types of genotype errors and parameters set

From: Level-biases in estimated breeding values due to the use of different SNP panels over time in ssGBLUP

ScenarioDiagaFurther description
101000 missing random SNPs for each Affyb animal
201000 common random missing SNPs for Affy animals
301000 common random SNP genotypes randomly changed for Affy animals, equal probability for all genotypes
401000 common random SNP genotypes randomly changed for Affy animals, probability based on Hardy–Weinberg genotype frequency
BaseLine0 
D-210−2 
D-310−3 
D-410−4 
  1. aParameter added to the diagonal of the genomic relationship matrix to make it invertible
  2. bAnimal genotyped on the customized Affymetrix 55 k SNP chip