Meta-analysis for milk fat and protein percentage using imputed sequence variant genotypes in 94,321 cattle from eight cattle breeds

Table 5 Overlap between eQTL and significant variants

Set	Cells collected from milk samples			Blood cells
Set	Total	eQTL	%	Total	eQTL	%
All	9,191,239	6678	0.07	8,587,100	52,802	0.61
p_gwas_fat % ≤ 10⁻⁸	22,152	9	0.04	20,702	476	2.30
p_meta_fat % ≤ 10⁻⁸	20,087	3	0.01	18,735	633	3.38
p_gwas_prot % ≤ 10⁻⁸	28,967	5	0.02	27,781	1081	3.89
p_meta_prot % ≤ 10⁻⁸	33,911	13	0.04	32,505	1496	4.60

All: all variants present in both meta-analysis and eQTL study; p_gwas_fat % ≤ 10⁻⁸, p_gwas_prot % ≤ 10⁻⁸, p_meta_fat % ≤ 10⁻⁸ and p_meta_prot % ≤ 10⁻⁸: variants with a p-value ≤ 10⁻⁸ in at least one of the within population GWAS and meta-analysis for fat and protein percentage, respectively; total: total number of variants in a set of variants, eQTL: number of variants in a set that were eQTL, %: eQTL total*100%

ISSN: 1297-9686