Table 1 Genotyping scenarios evaluated
Scenario | Description | Number of SNPs |
|---|---|---|
Illumina 50 Kv2 | Illumina 50 Kv2 (all) | 6711 |
Illumina HD | Illumina HD (all) | 49,579 |
Two-Illumina | Illumina 50 Kv1 and Illumina 50 Kv2 in a 1:1 ratio | 6924 |
Two-mixed | Illumina 50 Kv2 and IDBv3 in a 1:1 ratio | 7245 |
Three-MD | Illumina 50 Kv2, GSeekHD and IDBv3 in a 1:1:1 ratio | 10,033 |
Mixed MD/HD | Illumina 50 Kv2 and Illumina HD in a 9:1 ratio | 50,142 |