Table 4 Phasing results from Eagle2 for genotype scenarios per population
Scenario | All | Heterozygous | Time (min) | Memory (MB) | ||||
|---|---|---|---|---|---|---|---|---|
Correct | Unphased | Incorrect | Correct | Unphased | Incorrect | |||
Illumina 50 Kv2 | 99.98 | 0.00 | 0.02 | 99.89 | 0.00 | 0.11 | 3325 | 1288 |
Illumina HD | 99.89 | 0.00 | 0.11 | 99.49 | 0.00 | 0.51 | 7789 | 1495 |
Two-Illumina | 99.98 | 0.00 | 0.02 | 99.89 | 0.00 | 0.11 | 2528 | 1266 |
Two-mixed | 99.98 | 0.00 | 0.02 | 99.90 | 0.00 | 0.10 | 2339 | 1307 |
Three-MD | 99.99 | 0.00 | 0.01 | 99.93 | 0.00 | 0.07 | 2069 | 1468 |
Mixed MD/HD | 99.92 | 0.00 | 0.08 | 99.64 | 0.00 | 0.36 | 5344 | 3336 |