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Table 3 Estimates of variance components, heritability, and likelihood ratio statistics with associated p-values

From: Prediction of genetic merit for growth rate in pigs using animal models with indirect genetic effects and genomic information

 

Classic

Indirect

\(\sigma_{{a_{D} }}^{2}\)

3339 (± 450)

3349 (± 451)

\(\sigma_{{a_{I} }}^{2}\)

 

34.4 (± 16.3)

\(\rho_{{a_{D,I} }}\)

 

0.06 (± 0.18)

\(\sigma_{u}^{2}\)

951 (± 319)

908 (± 306)

\(\sigma_{{l_{D} }}^{2}\)

636 (± 131)

633 (± 131)

\(\sigma_{{e_{D} }}^{2}\)

10,971 (± 289)

10,989 (± 295)

\(\sigma_{{l_{I} }}^{2}\)

37.7 (± 11.1)

19.1 (± 12.2)

\(\sigma_{{e_{I} }}^{2}\)

112.9 (± 18.1)

97.4 (± 21.8)

\(\sigma_{p}^{2}\)

17,188 (± 420)

17,597 (± 495)

\(\sigma _{TBV}^{2}\)

 

6201 (± 1694)

\(h^{2}\)

0.19 (± 0.02)

0.19 (± 0.02)

\(T^{2}\)

 

0.35(± 0.09)

\(- 2LogL\)

119,074.46

119,067.12

\(P\left( {\Delta LogL} \right)\)

 

0.025

  1. \(\sigma _{{{\text{a}}_{\text{D}} }}^{2}\), direct genetic variance. \(\sigma _{{{\text{a}}_{\text{I}} }}^{2}\), indirect genetic variance. \(\rho_{{{\text{a}}_{{{\text{D}},{\text{I}}}} }}\), genetic correlation between direct- and indirect- genetic effects. \(\sigma_{\text{u}}^{2}\), sex-year-month variance. \(\sigma _{{{\text{l}}_{\text{D}} }}^{2}\), litter variance. \(\sigma_{{{\text{e}}_{\text{D}} }}^{2}\), residual variance. \(\sigma_{{1{\text{I}}}}^{2}\), indirect litter variance. \(\sigma _{{{\text{e}}_{\text{I}} }}^{2}\), indirect animal variance. \(\sigma_{p}^{2}\), total phenotypic variance. \(\sigma _{\text{TBV}}^{2}\), total heritable variance. \({\text{h}}^{2}\), direct heritability. \({\text{T}}^{2}\): total heritability. \(- 2LogL\), -2 times the log-likelihood. \(P\left( {\Delta LogL} \right)\), Chi square p-value (2 degrees of freedom) of log-likelihood ratio between INDIRECT and CLASSIC