Genomic regions and signaling pathways associated with indicator traits for feed efficiency in juvenile Atlantic salmon (Salmo salar)

Table 2 Transcription factors that were enriched in the QTL regions on chromosomes (Chr) 9 and 12 with their start and end position on the chromosome

Transcription factor	Gene ID	Chr	Start	End	ALC^a		ALN^b
Transcription factor	Gene ID	Chr	Start	End	b₁	q	b₁	q
Steroid hormone receptor ERR2-like	LOC106611051	9	22198787	22262832	− 0.08	0.45	− 0.26	0.02
Hepatocyte nuclear factor 3-alpha-like	LOC106611236	9	34548245	34551243	− 0.09	0.03	− 0.04	0.65
Uncharacterized LOC106611247	LOC106611247	9	35172348	35208430	− 0.05	0.34	− 0.12	0.03
Forkhead box protein N3-like	LOC106611366	9	42014771	42135841	− 0.07	0.57	− 0.27	0.03
Gastrula zinc finger protein XlCGF26.1-like	LOC106612579	9	106204316	106211994	− 0.13	0.02	− 0.09	0.29
Transcription factor SOX-4-like	LOC106565395	12	52077963	52084651	− 0.26	0.04	− 0.33	0.06
Interferon regulatory factor 6-like	LOC106565674	12	59247924	59255854	− 0.17	0.00	− 0.14	0.06

^aAtom % ¹³C liver (ALC)
^bAtom % ¹⁵N liver (ALN)
b₁ is the fixed regression coefficient of the phenotype for the trait (ALC or ALN) and q is the false discovery rate (Benjamini–Hochberg corrected)

ISSN: 1297-9686