Fig. 3
From: Male recombination map of the autosomal genome in German Holstein
Localization of putatively misplaced candidates on BTA26. a Heatmap of recombination rate with misplaced candidates. The selected window of 80 SNPs ranges from 23.08 to 27.53 Mbp. A single SNP (on the top) and a cluster of four SNPs (in the middle) are misplaced in the underlying genome assembly. Missing values are filled with white color. b Visualizes the inflated LD between physically distant loci. A cluster of inflated LD appears between markers mapped as far as ~ 25 Mbp from each other. Two SNPs ARS-BFGL-NGS-119202 and ARS-BFGL-NGS-58121 were mainly involved in shaping the outlaying pattern of LD. c The genetic distances of SNPs approximated with the likelihood-based approach before (grey) and after removing misplaced candidates (black) by physical distance