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Table 1 Description of the breeds analyzed, shared and breed-exclusive SNPs

From: Whole-genome sequencing reveals insights into the adaptation of French Charolais cattle to Cuban tropical conditions

Breed Country Number of samples Wattersons variability % missing Mean depth CHCU-exclusive SNPs Shared SNPs with CHCU Shared SNPs with CHFR Shared SNPs with CHCA Shared SNPs with LIMS Shared SNPs with TXL Shared SNPs with BRG
CHCU CU 12 0.0021 0.03 12.5 1,176,249      
CHFR FR 15 0.0015 0.06 11.4 582,972 10,110,342     
CHCA CA 15 0.0018 0.13 10.4 737,160 10,667,212 10,847,599    
LIMS FR/CA 11 0.0016 0.21 8.7 695,594 9,429,688 9,796,472 9,961,440   
TXL US 4 0.0023 0.08 10.3 576,849 8,243,412 7,639,145 8,085,077 7,370,881  
BRG US 5 0.0028 0.05 11.5 842,771 9,514,147 6,854,966 9,033,938 7,934,515 7,655,123
BRM US/AU 10 0.0035 0.11 10.8 14,929,949 11,442,083 8,653,635 10,134,007 8,267,282 9,169,187 12,519,875