Table 1 Number of SNVs and the relative proportions of the six subsets of the test set for pCADD
Pig partition | Number SNVs (proportion of test set) | Number of simulated SNVs | Number of derived SNVs | Class distribution (simulated/derived) |
|---|---|---|---|---|
Test set | 11,197,628 (100.00%) | 5,598,814 | 5,598,814 | 50.00%/50.00% |
Not cDNA | 10,884,147 (97.20%) | 5,404,059 | 5,480,088 | 49.65%/50.35% |
cDNA | 313,481 (2.80%) | 194,755 | 118,726 | 62.13%/37.87% |
Not CDS | 154,622 (1.38%) | 84,730 | 69,892 | 54.80%/5.20% |
CDS | 158,859 (1.42%) | 110,025 | 48,834 | 69.26%/30.74% |
Synonymous | 75,216 (0.67%) | 40,147 | 35,069 | 53.38%/46.62% |
Missense | 83,643 (0.75%) | 69,878 | 13,765 | 83.54%/16.46% |