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Table 5 Information on SNPs associated with growth traits

From: Identification of QTL regions and candidate genes for growth and feed efficiency in broilers

Traitsa

SNPs

rsnameb

GGAc

Position

Alleles

MAF

βd

Var (%)e

P value

Candidate gene

Distance (kb)f

BW28

AX_76670473

rs14422146

4

4,486,368

C/T

0.15

16.35

3.56

2.23e−05

TM9SF2L

D 33.97

BW28

AX_172583411

rs732597861

16

2,342,047

G/T

0.34

 − 11.15

2.92

1.02e−07

BG8

U 47.43

BW28

AX_172583423

rs794119717

16

2,399,483

T/G

0.39

9.75

2.37

8.07e−06

BG8

D 3.59

BW28

AX_172583407

NA

16

2,451,685

C/T

0.26

 − 16.75

5.61

9.08e−08

ZNF692

Intron 8

BW28

AX_172583410

rs736020965

16

2,455,748

A/G

0.44

 − 11.83

3.62

1.32e−06

TRIM7.2

Intron 6

BW28

AX_172583409

rs739811469

16

2,469,604

G/A

0.27

13.63

3.87

1.94e−05

BZFP1

D 2.03

BW28

AX_101003762

rs15788030

16

2,502,939

T/C

0.26

 − 19.26

7.56

4.41e−10

TRIM39.2

Intron 2

BW28

AX_75851417

rs312648889

16

2,506,461

T/C

0.41

13.32

4.50

5.81e−06

TRIM27.2

Exon 1

BW28

AX_75851232

rs15788124

16

2,537,500

C/T

0.12

 − 16.62

3.11

2.52e−05

RACK1

D 7.68

BW28

AX_75851146

rs316225723

16

2,548,043

T/C

0.16

 − 21.62

6.50

1.21e−08

BG1

U 2.17

BW28

AX_75852151

rs16042753

16

2,630,726

G/A

0.20

20.24

6.83

1.52e−08

CYP21A1

D 0.03

BW28

AX_75851193

rs315640666

16

2,658,014

G/A

0.41

 − 14.44

5.32

3.42e−07

CD1B

U 4.15

BW42

AX_172570918

rs314078158

1

5,6289,810

T/C

0.17

 − 25.08

3.11

2.70e−06

ATP6V0A4

U 39.37

BW42

AX_76670473

rs14422146

4

4,486,368

C/T

0.15

25.83

2.95

8.29e−06

TM9SF2L

D 33.97

BW42

AX_172581004

rs731588889

10

13,578,799

C/T

0.11

 − 29.08

2.95

7.14e−06

MRPS11

U 33.53

BW42

AX_172583411

rs732597861

16

2,342,047

G/T

0.34

 − 16.40

2.10

1.98e−07

BG8

U 47.43

BW42

AX_172583424

rs741681687

16

2,419,674

A/C

0.40

21.15

3.75

1.16e−06

KIFC1

U 19.46

BW42

AX_172583407

NA

16

2,451,685

C/T

0.26

 − 27.29

4.95

7.17e−09

ZNF692

Intron 8

BW42

AX_101003762

rs15788030

16

2,502,939

T/C

0.26

 − 22.19

3.33

1.94e−06

TRIM39.2

Intron 2

BW42

AX_75851146

rs316225723

16

2,548,043

T/C

0.16

 − 25.15

2.92

1.10e−05

BG1

U 2.17

  1. aBW28, body weight at 28 d of age; BW42, body weight at 42 d of age
  2. bNA: not available
  3. cGallus gallus chromosome
  4. dAllele substitution effect was the additive effect estimated by GEMMA
  5. eThe proportion of the genetic variance accounted by the SNP
  6. fU and D indicate that the SNP is upstream and downstream of a gene, respectively
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Genetics Selection Evolution

ISSN: 1297-9686