Table 2 Difference in \({r}^{2}\) between the AllWestindvsEUT and the best-performing SNP panels for dairy breed proportion prediction selected from 38Â k SNPs
#SNPs | Kenya | Uganda | Ethiopia | Tanzania | Senegal |
|---|---|---|---|---|---|
100 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
200 | 0.000 | 0.000 | − 0.002 | − 0.002 | − 0.016 |
300 | 0.000 | 0.000 | − 0.004 | − 0.001 | − 0.019 |
400 | − 0.001 | 0.000 | − 0.009 | 0.000 | − 0.026 |
500 | 0.000 | 0.000 | − 0.010 | − 0.003 | − 0.016 |
1000 | − 0.002 | 0.000 | − 0.009 | − 0.006 | − 0.001 |
1500 | 0.000 | 0.000 | − 0.008 | − 0.003 | − 0.002 |