Skip to main content

Table 2 List of Lacaune deficient homozygous haplotypes

From: Identification of homozygous haplotypes carrying putative recessive lethal mutations that compromise fertility traits in French Lacaune dairy sheep

Haplotype OAR Number of markersa Positionb (Mb) Carrier frequencyc (%) Number of homozygotes
Expd Obse Deficit (%) Poisson P-value
LDHH1 4 46/42 43.4–46.3 6.7 21 0 100 7.6 × 10−10
LDHH2 13 28/26 44.8–46.8 6.2 17 0 100 4.1 × 10−8
LDHH3 3 48/39 32.0–34.9 4.3 10 0 100 7.0 × 10−5
LDHH4 3 24/19 132.4–133.9 3.8 10 0 100 5.5 × 10−5
LDHH5 3 29/23 131.1–132.7 3.7 9 0 100 1.9 × 10−4
LDHH6 3 27/21 136.2–137.4 12.1 72 3 96 3.5 × 10−27
LDHH7 17 29/27 0.0–1.6 4.7 12 1 92 9.9 × 10−5
LDHH8 18 23/20 25.7–27.5 5.5 14 2 86 9.4 × 10−5
LDHH9 18 37/33 31.3–33.5 4.4 13 2 85 2.2 × 10−4
LDHH10 18 26/23 33.0–34.6 5.7 17 3 82 4.1 × 10−5
LDHH11 3 28/28 128.9–131.1 7.2 19 4 79 3.8 × 10−5
  1. aNumber of LDHH markers refers to ovine genome reference assembly Oar_v2.0/Oar_v3.1 and listed in Additional file 2: Table S3
  2. bPosition on ovine genome assembly Oar_v3.1
  3. cFrequency of carriers in the entire genotyping population (n = 19,102)
  4. dExpected
  5. eObserved