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Table 1 Statistics of haplotype blocks defined by fixed distance

From: Haplotype genomic prediction of phenotypic values based on chromosome distance and gene boundaries using low-coverage sequencing in Duroc pigs

  Size of haplotype block (kb)
50 100 150 200 250 300 350 500 750 1000 2000 3000 4000 5000
Total number of haplotypes 553,758 562,459 547,904 529,442 511,414 495,014 481,679 447,392 410,123 386,781 343,749 330,736 322,190 319,090
Number of blocks 33,629 18,726 13,060 10,044 8,177 6,890 5,961 4,252 2,881 2,185 1,110 752 565 458
Average number of haplotypes per block 16.47 30.04 41.95 52.71 62.54 71.85 80.81 105.22 142.35 177.02 309.68 439.81 570.25 696.70
Minimum SNPs per block 2 2 2 2 2 2 2 2 2 2 5 3 11 19
Maximum SNPs per block 79 120 167 195 227 285 320 414 549 774 1380 2081 2392 2840
Average number of SNPs per block 14.52 26.07 37.38 48.60 59.69 70.85 81.89 114.80 169.43 223.40 439.75 649.10 863.94 1065.78