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Table 1 Statistics of haplotype blocks defined by fixed distance

From: Haplotype genomic prediction of phenotypic values based on chromosome distance and gene boundaries using low-coverage sequencing in Duroc pigs

 

Size of haplotype block (kb)

50

100

150

200

250

300

350

500

750

1000

2000

3000

4000

5000

Total number of haplotypes

553,758

562,459

547,904

529,442

511,414

495,014

481,679

447,392

410,123

386,781

343,749

330,736

322,190

319,090

Number of blocks

33,629

18,726

13,060

10,044

8,177

6,890

5,961

4,252

2,881

2,185

1,110

752

565

458

Average number of haplotypes per block

16.47

30.04

41.95

52.71

62.54

71.85

80.81

105.22

142.35

177.02

309.68

439.81

570.25

696.70

Minimum SNPs per block

2

2

2

2

2

2

2

2

2

2

5

3

11

19

Maximum SNPs per block

79

120

167

195

227

285

320

414

549

774

1380

2081

2392

2840

Average number of SNPs per block

14.52

26.07

37.38

48.60

59.69

70.85

81.89

114.80

169.43

223.40

439.75

649.10

863.94

1065.78