Table 2 Eight large putative assembly errors in autosomes of the ARS1 assembly as compared with the Saanen_v1 assembly
From: A near complete genome for goat genetic and genomic research
Name | Position in Saanen_v1 | Position in ARS1 | Length (bp) | Description |
|---|---|---|---|---|
Region 1 | 5:99,084,275–101,783,455 | 5:98,973,162–101,785,323 | 2,812,161 | Inverted |
Region 2 | 7:9,511,868–14,628,369 | 7:9,353,868–13,740,007 | 4,386,139 | Inverted |
Region 3 | 11:103,733,339–106,912,333 | 11:103,232,270–106,224,990 | 2,992,720 | Inverted |
Region 4 | 17:61,267–2,700,348 | 17:0–2,620,773 | 2,620,773 | Inverted |
Region 5 | 18:14,220,403–20,470,517 | 18:16,211,458–22,469,539 | 6,258,081 | Inverted |
Region 6 | 23:33,110,782–35,437,285 | 18:0–1,987,427 | 1,987,427 | Incorrectly placed |
Region 7 | 23:48,920,741–50,832,698 | 23:32,018,169–33,927,923 | 1,909,754 | Incorrectly placed |
Region 8 | 25:40,139–1,085,452 | 25:34,034,345–35,098,278 | 1,063,933 | Incorrectly placed |