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Table 1 Regions of runs of homozygosity (ROH) and runs of heterozygosity (ROHet) that were significantly associateda with antibody response to PRRSV vaccination

From: Further host-genomic characterization of total antibody response to PRRSV vaccination and its relationship with reproductive performance in commercial sows: genome-wide haplotype and zygosity analyses

ROH/ROHet SSC Start pos (Mb) End pos (Mb) P-value # SNPsb Coefficient (SE)c
ROH
 ROH1119 1 55.4 56.5 0.0021 26 − 0.28 (0.09)
 ROH681 4 70.1 74.1 0.0037 90 − 0.19 (0.07)
 ROH1783 5 93.6 95.2 0.0089 49 0.31 (0.12)
 ROH2475 5 94.5 98.9 0.0038 102 − 0.42 (0.14)
 ROH2949 7 8.4 11.4 0.0005 85 − 0.30 (0.09)
 ROH1596 10 57.5 58.9 0.0037 31 − 0.25 (0.09)
 ROH2603 11 63.3 64.4 0.0064 29 0.21 (0.08)
 ROH1143 13 193.5 194.6 0.0058 32 − 0.15 (0.05)
ROHet
 ROHet133 5 71.2 71.6 0.006 10 0.12 (0.05)
 ROHet240 17 2.1 2.8 0.009 17 0.15 (0.06)
  1. PRRS Porcine reproductive and respiratory syndrome, ROH runs of homozygosity, ROHet runs of heterozygosity, SSC Sus scrofa chromosome, pos position
  2. aP-value < 0.01
  3. bNumber of SNPs within the ROH or ROHet region
  4. cEffect on sample-to-positive (S/P) ratio by presenting the ROH or ROHet