Skip to main content

Table 4 List of haplotypes in the Original Braunvieh population identified by the trio-based approach

From: Mining massive genomic data of two Swiss Braunvieh cattle populations reveals six novel candidate variants that impair reproductive success

Namea Chr Start End Allele frequency Proposed associated geneb
OH2 2 1005580 1614673 4.48 TUBGCP5
OH3 11 10,406494 104418358 5.76 MYMK
OH4 19 14336760 15222429 3.87 LIG3
OH5 21 5195518 6367707 4.56 LYSMD4
OH6 25 9596610 10624288 3.87 USP7
  1. OH OB haplotype, Chr chromosome number, Start and End start and end positions according to the reference sequence ARS-UCD1.2 [36]
  2. aSince the name OH1 is reserved for a pathogenic CNGB3-variant [101], numbering starts at OH2
  3. bAccording to NCBI Annotation Release 106 [54]