Mining massive genomic data of two Swiss Braunvieh cattle populations reveals six novel candidate variants that impair reproductive success

Table 4 List of haplotypes in the Original Braunvieh population identified by the trio-based approach

Name^a	Chr	Start	End	Allele frequency	Proposed associated gene^b
OH2	2	1005580	1614673	4.48	TUBGCP5
OH3	11	10,406494	104418358	5.76	MYMK
OH4	19	14336760	15222429	3.87	LIG3
OH5	21	5195518	6367707	4.56	LYSMD4
OH6	25	9596610	10624288	3.87	USP7

OH OB haplotype, Chr chromosome number, Start and End start and end positions according to the reference sequence ARS-UCD1.2 [36]
^aSince the name OH1 is reserved for a pathogenic CNGB3-variant [101], numbering starts at OH2
^bAccording to NCBI Annotation Release 106 [54]

ISSN: 1297-9686