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Table 2 Single nucleotide variants (SNVs) for each breed

From: Assessing Bos taurus introgression in the UOA Bos indicus assembly

Breeds Sub-speciesa ARS_UCD1.2b UOA_Brahman_1b
Angus Bos taurus taurus 11,396,537 17,143,672
Hereford Bos taurus taurus 9,971,428 16,734,834
Holstein Bos taurus taurus 11,133,911 11,459,171
Jersey Bos taurus taurus 9,512,074 15,423,670
Shorthorn Bos taurus taurus 8,464,487 14,393,682
Simmental Bos taurus taurus 14,988,534 20,404,489
Bohaic Bos taurus indicus 16,102,113 19,819,636
Boran Bos taurus indicus 27,861,344 27,757,944
Brahman Bos taurus indicus 33,177,201 30,592,708
Gir Bos taurus indicus 24,288,498 22,426,843
Indianzebu Bos taurus indicus 20,210,906 18,518,614
Kenana Bos taurus indicus 26,760,622 24,953,316
Mangshi Bos taurus indicus 21,993,501 20,859,379
Nelore Bos taurus indicus 22,770,177 21,279,805
Ogaden Bos taurus indicus 25,330,919 24,224,387
  1. aSub-species were assigned based on original labels from NCBI-SRA
  2. bSNVs passing the variants filtration process respective to the used reference genome
  3. cHighly admixed with B. taurus ancestry