A genome-wide screen for resilient responses in growing pigs

Table 2 Genomic regions associated with the increase in acute-phase protein haptoglobin (∆HP) four days after the vaccine challenge

SSC	Region^a (Mb)	SNP^b	p-value	BF	%GV^c	Candidate genes^d
8	123.8–125.8	rs333312548	8.52E−06	12.4	0.67	SMARCAD1^e,f, ATOH1^f
9	123.9–125.9	rs81417088	2.23E−05	11.9	0.63	RNASEL^g, RGL1^f, RGS16^f, RGSL1^f, RGS8^f, LAMC1^f, LAMC2^f, NCF2^g
13	5.7–7.7	rs345082940	4.81E−05	42.4	1.59	RAB5A^g, KAT2B^f
13	21.0–23.0	rs81326526	2.83E−05	23.6	2.14	MLH1^e,f,g, MYD88^e,f,g, ARPP21^e, PLCD1^f, ACAA1^f, LRRFIP2^f

SSC Sus scrofa chromosome, BF Bayes factor
^aAssociated genomic region
^bSNPs identified as associated
^cProportion of the genetic variance of ∆HP explained by the associated genomic region
^dCandidate genes involved in the response to stress^e, or signal transduction^f, or immune response^g

ISSN: 1297-9686