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Table 2 Putative signatures of selection identified in the iHS analysis within each of the Northern, Southern, heavy, and local population groups

From: Genome-wide mapping of signatures of selection using a high-density array identified candidate genes for growth traits and local adaptation in chickens

Group

GGA

Start (bp)

End (bp)

Length (kb)

Genes

Northern

1

188,750,000

189,220,000

470

FZD4, PRSS23, ME, FAM181B, PRCP, RAB30, CCDC90B

Southern

1

24,540,000

25,050,000

510

CTTNBP2, CFTR, GASZ, WNT2, ST7, ST7-OT3_2, CAPZA2, MET

Heavy

2

10,000,000

10,490,000

490

DIP2C, LARP4B, GTPBP4, WDR37

18a

6,200,000

6,710,000

510

ANKFN1, NOG, C17orf67, DGKE, TRIM25, COIL, SCPEP1, RAB11FIP4, gga-mir-1561, gga-mir-193a, gga-mir-365-2, UTP6, SUZ12, CRLF3, ATAD5

Local

4

4,870,000

5,360,000

490

FGF13, F9, MCF2, ATP11C, ARL13A, XKRX, NOX1, CSTF2, TRMT12, SYTL4, SRPX2, TSPAN6, TNMD, PCDH19

7

16,830,000

17,310,000

480

CHN1, gga-mir-1570, CHRNA1, WIPF1, GPR155, SCRN3, CIR1, SP9, SP3

8

15,270,000

15,730,000

460

-

25

660,000

1,210,000

550

UBQLN4, LAMTOR2, OTUD7B, MTMR11, SF3B, COPA, EDPE, S100A11

  1. Gallus gallus chromosome number, GGA
  2. aGenomic region that overlapped with the between population tests (Rsb and XP-EHH)