Genome-wide mapping of signatures of selection using a high-density array identified candidate genes for growth traits and local adaptation in chickens

Table 3 Overlapping genomic regions identified by the two between-populations tests (Rsb and XP-EHH) between the Northern/Southern and between the heavy/light population groups

Contrasting groups	GGA	Start (bp)	End (bp)	Length (kb)	Genes
Northern vs Southern	4	4,870,000	5,200,000	330	FGF13, F9, MCF2, ATP11C, ARL13A, XKRX, NOX1, CSTF2, TRMT12
Heavy vs Light	2	85,920,000	86,410,000	490	CHMP5, FH, SDHA, CCDC127, SLC6A19, SLC6A18, TERT, CLPTM1L, LPCAT1, NDUFS6, IRX4
	2	99,700,000	100,880,000	1180	LRRC30, LAMA1, ARHGAP28, AKAP7L, EPB41L3, ZBTB14, C18ORF42, DLGAP1L
	10	11,050,000	11,370,000	320	PDE8A, SCARNA15, FSD2, WHDC1, HOMER2, FAM103A1, C10H15ORF40, BTBD1, TM6SF1, HDGFRP3, BNC1
	10	12,070,000	12,550,000	480	TMC3, STARD5, IL16, C10H15ORF26, MESDC1, MESDC2, CEMIP, ABHD17C, ARNT2
	18^a	6,130,000	6,670,000	540	ANKFN1, NOG, C18H17ORF67, DGKE, TRIM25, COIL, SCPEP1, RAB11FIP4, MIR1561, MIR193A, MIR365-2, COPRS, UTP6, SUZ12
	20	2,160,000	2,510,000	350	CHMP48, ZNF341, MIR6674, PXMP4, E2F1, NECAB3, CBFA2T2, SNTA1, TOX2

ISSN: 1297-9686