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Table 4 Runs of homozygosity islands identified within the heavy, light, Northern, and Southern population groups

From: Genome-wide mapping of signatures of selection using a high-density array identified candidate genes for growth traits and local adaptation in chickens

Group

GGA

Start (bp)

End (bp)

Length (kb)

Genes

Heavy

3

86,818,664

86,828,229

9.56

–

3

86,861,928

87,641,651

779.72

LOC107053130, LOC107053149, PRIM2, RAB23, BAG2, ZNF451, BEND6, DST, LOC107053131, COL21A1

3

87,692,868

87,767,683

74.81

BMP5

4

39,754,881

39,768,758

13.87

CENPU, PRIMPOL

Light

1

16,630,326

16,645,553

15.23

No genes

1

16,848,684

17,866,916

1018.32

FAM19A5, LOC107051638, LOC107051639

2

97,941,997

98,028,867

86.87

LOC107052691

2

98,444,389

98,584,269

139.88

LOC107052693, APCDD1, VAPA

4

46,119,218

46,127,846

8.63

AFF1, PTPN13

4

46,404,020

46,659,733

255.71

ARHGAP24, COPS4, LIN54, LOC107051735, THAP9, SEC31A

4

46,964,555

47,158,488

193.93

NKX6-1, CDS1

Northern

3

98,743,815

99,045,750

301.93

FAM84A

4

39,572,187

40,471,398

899.21

SNX25, KIAA1430, SLC25A4, LOC107051755, LOC769128, HELT, ACSL1, CENPU, PRIMPOL, CASP3, LOC107051754, IRF2, ENPP6, STOX2, TRAPPC11, RWDD4, LOC107051753, ING2, CDKN2AIP, LOC100858888, LOC100858925, WWC2, DCTD, LOC107051751, TENM3, LOC107051752

5

39,968,737

40,139,698

170.96

NRXN3, MIR1799, LOC107053526, LOC107053524

5

41,082,716

41,433,436

350.72

-

11

4,048,187

4,250,262

202.08

-

Southern

1

2,977,765

3,214,900

237.13

PODXL, MKLN1

1

3,258,785

6,094,202

2835.42

LOC107054126, LOC418249, LOC107054102, MIR29B1, MIR29A, K123, IL2RA, RBM17, PFKFB3, LOC107053972, PRKCQ, SFMBT2, LOC101752189, LOC101751191, LOC107054603, LOC419112, ITIH5, ITIH2, KIN, ATP5C1, TAF3, LOC107054553, GATA3, LOC107054641, LOC107054627, LOC107054620, LOC107054917, LOC100859811, MIR1626, LOC101747941, CELF2, MIR1596, USP6NL

1

148,678,584

149,784,495

1105.91

LOC107051465, SLITRK5, LOC101748664

3

45,812,852

47,048,955

1236.10

LOC107053025, FNDC1, SF3B5, STX11, TRNAL-UAA, LOC107053022, LOC107053024, LOC107053023, UTRN, MIR1734, LOC107053061, EPM2A, FBXO30, LOC101748225, SHPRH, GRM1, RAB32, ADGB

11

17,818,723

18,355,368

536.64

IRF8, LOC768665, COX4I1, EMC8, GINS2, GSE1, LOC107054326, LOC107054321, KIAA0513, LOC100857445, TRNAM-CAU, MAP1LC3B, ZCCHC14, JPH3, KLHDC4, SLC7A5, LOC107054327, CA5B, LOC107054328, BANP

  1. Chromosome number Gallus gallus (GGA), positions of the genomic regions (in base pairs, bp) and length are reported
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Genetics Selection Evolution

ISSN: 1297-9686