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Table 2 Average true breeding value (TBV) of the top 10% candidates based on genomic breeding values predicted by different reference populations (PB: purebreds in GP2; CB_extreme: two_tailed crossbreds in DLY; CB_random: random crossbreds in DLY) with different population sizes (500, 1000, 2000, 3000, 4000, 5000, 6000, 6500) and two methods (GBLUP and BSLMM) for different heritabilities (\({{h}}^{2}\))

From: Genomic prediction in pigs using data from a commercial crossbred population: insights from the Duroc x (Landrace x Yorkshire) three-way crossbreeding system

\({{h}}^{2}\)

Class

GBLUP

BSLMM

PB

CB_extreme

CB_random

PB

CB_extreme

CB_random

0.5

6500

2.943

2.771

2.730

3.016

3.026

2.874

6000

2.932

2.746

2.708

3.019

2.951

2.844

5000

2.899

2.715

2.689

2.984

2.817

2.820

4000

2.863

2.683

2.648

2.950

2.817

2.758

3000

2.810

2.640

2.603

2.882

2.766

2.720

2000

2.734

2.655

2.522

2.793

2.747

2.599

1000

2.593

2.488

2.410

2.614

2.587

2.438

500

2.465

2.481

2.333

2.468

2.601

2.313

0.3

6500

2.678

2.640

2.481

2.720

2.821

2.544

6000

2.653

2.592

2.480

2.697

2.848

2.513

5000

2.617

2.477

2.419

2.668

2.765

2.457

4000

2.581

2.619

2.391

2.606

2.874

2.406

3000

2.531

2.574

2.357

2.538

2.705

2.350

2000

2.490

2.452

2.338

2.492

2.625

2.319

1000

2.383

2.365

2.241

2.374

2.407

2.218

500

2.302

2.326

2.102

2.296

2.331

2.040

0.1

6500

2.202

2.589

2.126

2.246

2.630

2.092

6000

2.200

2.576

2.152

2.216

2.585

2.111

5000

2.231

2.543

2.153

2.206

2.597

2.109

4000

2.162

2.524

2.090

2.165

2.451

2.033

3000

2.209

2.454

2.060

2.173

2.469

2.000

2000

2.160

2.160

2.002

2.142

2.154

1.962

1000

2.137

2.170

1.920

2.051

2.191

1.864

500

2.079

1.980

1.839

2.035

1.943

1.791

  1. TBV were averaged across 50 replications for scenarios involving randomization