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Table 5 Differences in standardised acute hyperthermia resistance (TLE) and dominance effects for genotypes at the peak SNPs for the identified QTL

From: Genetic architecture of acute hyperthermia resistance in juvenile rainbow trout (Oncorhynchus mykiss) and genetic correlations with production traits

QTL name

Chr

Peak SNP identifier

Peak SNP position (Mb)

MAF

TLE difference between homozygous genotypes

Dominance effect (p-value)

TLE2-1

2

Affx-1237558532

78.97

0.34

0.39

0.00 (0.90)

TLE13-1

13

Affx-1237409861

36.68

0.42

0.69

− 0.05 (0.13)

TLE13-2

13

Affx-1237407727

45.63

0.46

0.37

0.09 (0.01)

TLE13-3

13

Affx-1237411204

47.37

0.24

0.49

− 0.08 (0.04)

TLE14-1

14

Affx-1237353641

42.93

0.31

0.41

− 0.04 (0.33)

TLE17-1

17

Affx-1248428573

20.73

0.21

0.45

0.02 (0.67)

  1. Chr., chromosome; MAF, minor allele frequency; Mb stands for mega-base-pair; Dominance effect, mean difference between the heterozygous genotype TLE and the average of the two homozygous genotypes TLE, p-value in bold means the p-value is lower than the significance threshold of 0.05
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Genetics Selection Evolution

ISSN: 1297-9686