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Table 6 Minimum and maximum FST for the top 0.5% of SNPs (or total number of SNPs where minimum FST is lower than 0.1) and total number of genes within 1 Mb of SNPs from within and across breed and genetic group fixation index analysis

From: Genetic characterisation of the Connemara pony and the Warmblood horse using a within-breed clustering approach

Comparison

Minimum FST / number of SNPs with FST > 0.1

Maximum FST

Number of genes within 1 Mb of the top 0.5% FST SNPs

Between CP and WB

0.334

0.626

6729

HM within CP

303

0.251

2522

HM within WB

0.218

0.472

7613

HM C1 against CP

0.266

0.701

7781

HM C2 against CP

0.227

0.542

4528

HM C3 against CP

0.195

0.505

6763

HM W2 against WB

0.170

0.446

5166

HM W3 against WB

0.314

0.725

333

HM W4 against WB

0.120

0.379

6755

  1. FST Wright’s fixation index, SNP single nucleotide polymorphism, CP Connemara pony, WB Warmblood horse, HM harmonic mean
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Genetics Selection Evolution

ISSN: 1297-9686