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Table 3 Genetic profile of 26 individuals conditional on pedigree, marker and phenotypic data.

From: An efficient algorithm to compute marginal posterior genotype probabilities for every member of a pedigree with loops

    

Genotype Probabilities

Individual

Dam

Sire

Phenotype

Pr()

Pr()

Pr()

Pr()

A1, A4, A6

0

0

Normal

1.0

0.0

0.0

0.0

A2

0

0

Normal

0.0

0.5

0.5

0.0

A3, A5

0

0

Normal

1.0

0.0

0.0

0.0

A7

A1

A2

Normal

0.0

1.0

0.0

0.0

A8

A3

A2

Normal

0.00001

0.99999

0.0

0.0

A9, A10, A11

A4

A2

Normal

0.0

0.99999

0.00001

0.0

A12, A13

A4

A8

Normal

0.0

1.0

0.0

0.0

A14

A5

A9

Normal

0.0

1.0

0.0

0.0

A15, A16

A6

A10

Normal

0.0

1.0

0.0

0.0

A17

A6

A10

Normal

0.49995

0.49995

0.00001

0.0

A18

A6

A11

Normal

0.0

0.99999

0.00001

0.0

A19

A12

A9

Normal

0.00003

0.49999

0.49999

0.0

A20

A12

A9

Normal

0.00299

0.4985

0.4985

0.0

A21

A14

A15

Affected

0.0

0.0

0.0

1.0

A22

A14

A16

Affected

0.0

0.0

0.0

1.0

A23

A14

A7

Affected

0.0

0.0

0.0

1.0

A24, A25

A12

A9

Affected

0.0

0.0

0.0

1.0

A26

A13

A18

Affected

0.0

0.0

0.0

1.0

  1. Pr() denotes the probability of an individual being homozygous for the recessive allele.