Genetic diversity and population structure of six autochthonous pig breeds from Croatia, Serbia, and Slovenia

Table 5 Population genetics parameters inferred from the microsatellite (STR) and SNP data for the six Balkan autochthonous pig breeds

Breed	H_{exp STR}	H_{obs STR}	F_{ST STR}	F_{IT STR}	N_{A STR}	N_A/E	H_{exp SNP}	H_{obs SNP}
Banija spotted	0.640	0.595	0.170	0.189	5.750	3.339	0.363	0.363
Black Slavonian	0.651	0.655	0.177	0.213	6.292	3.366	0.338	0.342
Turopolje pig	0.359	0.392^a	0.123	0.155	3.125	1.814	0.171	0.188
Swallow-bellied Mangalitsa	0.594	0.562	0.157	0.170	4.583	2.840	0.258	0.256
Moravka	0.660	0.667	0.185	0.220	6.542	3.419	0.352	0.348
Krskopolje pig	0.679	0.657	0.171	0.196	5.750	3.511	0.361	0.366

H_exp—expected heterozygosity; H_obs—observed heterozygosity; F_ST—deviation from Hardy–Weinberg equilibrium between the studied populations; F_IT—deviation from Hardy–Weinberg equilibrium within each investigated population; N_{A STR}—number of alleles for the microsatellites; N_A/E—number of effective microsatellite alleles
^aSignificant at p < 0.01

ISSN: 1297-9686